PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1038011g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 632aa    MW: 68841.4 Da    PI: 6.236
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1038011g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.51.8e-16465511455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  PDK_30s1038011g001 465 VHNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLEEAIEYLKTLQ 511
                         6*************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-20459520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.254461510IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.42E-17464515No hitNo description
Gene3DG3DSA:4.10.280.109.0E-21465519IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-14465511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16467516IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 632 aa     Download sequence    Send to blast
MPLSQYHQYA TKDKPEATQS RANNCSADLF TMPDHEFAEL LWENGQIVMQ SHSSRPKKSS  60
LPTTFSSQAA GVREKDGRDA GNPRASQFDA MEPMVNDFSP SGPSADIGID AQDDDMVPWI  120
SFPIEEPLPK DALQNDYCSE FLNEFPGANL NSPSAYNKRT AADGSSGLGQ DIRNSHSAEH  180
EHALKAFAES SEPSRVRTSQ LFQFSQHCQS SAPSSKSRAT DTGIGDSTRT HLQNQNPSSA  240
KPPQLNGGML NFSHFSRPAM LAKANLHGVD GKRTNEKASA PLNINTVEST LIESACVFES  300
ATGSTLIESA SVFESATGVQ GQSVSVPPGM ELQSPVKLPQ EVIPVEHSEA ICQQDASRKN  360
DSNILHNNCS KPADQPASSS VAASAALRRH KTEKAPEVAV ASSSVCSANS AGAASNDPKQ  420
GDKRKSREGE ESGYQSEDFE DVSVDLRKPA TGRGMGAKRS RAAEVHNLSE RRRRDRINEK  480
MRALQELIPN CNKADKASML EEAIEYLKTL QMQVQILSMS SGLCMPPMLL PHDTAPTAIS  540
ADQQQQNIEA LHGSGINDSQ IQTPDQHARE NGHLHHISEN GIAQKVSSEM FRYWLQWTKA  600
YGHCLIEMGI ACKISMKDAT QLKSSTMWKF TF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1469474ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026665428.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
TrEMBLA0A3Q0IEJ80.0A0A3Q0IEJ8_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X2
STRINGXP_008807920.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.27e-39phytochrome interacting factor 3