PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1034021g002
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 666aa    MW: 72011.7 Da    PI: 6.6745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1034021g002genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH505.3e-16443488555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn  ErrRRdriN+++  L+el+P++      K +Ka++Le+A+eY+k Lq
  PDK_30s1034021g002 443 HNLSERRRRDRINEKMRALQELIPNC-----NKADKASMLEEAIEYLKTLQ 488
                         9************************8.....6******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-20436505IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088818.197438487IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-21442497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.82E-17443492No hitNo description
PfamPF000102.2E-13443488IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-16444493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MPLSEYHRLT ARDKPEATQS RGNNCSSDLF SMPDHEFAEL LWENGQVVMQ SHSSGPRKSS  60
FPTSFSPHAT GVEEKDRRDA IGPKASRFYA MDPMVSDFSP SGPSAHIGVN AQDDDMVPWI  120
NDPTEEPLAD DTPQNDYCLE FLNEFMGATL NPHSTCSKPM PSDRSCGLGQ HASKALTESK  180
SSEPRRVRTS QLFQLSQHCQ SSAPSSKSGV IDKGIGDAAK THLQTKNPAG PKPLQLNGSS  240
MLNFSHFSRP AMPAKANLHG ADRPRSNEKV SPPSNSNLVE STLIESMSGF KSATGVGGRS  300
TSGPPKMEVQ SSAQPPQEVI SVEHSESIWQ QDASTKNSTH ILTNNCSKPP DQLASSSVMA  360
SVALRRQETE KAPAAVVASS SVSSANSAGA ASNDPKQREK RKSLEGDESG YQSDDFEDVS  420
VELEKPATGR GISAKRSRAA EIHNLSERRR RDRINEKMRA LQELIPNCNK ADKASMLEEA  480
IEYLKTLQMQ VQIMSMNSGL CRPPMLLPPG MQHMHAPAMA RFLPMGVGMG MGMGFGYGMG  540
MYDMNCSPSC SMIPAPPFHG PQFPWPSIPG PLGLHGMPGS VKHQMFGVPE RGIPSSMPRS  600
SSSGLSVKAN SVPEITTPMT CAIPASEAAP ASISEDQQHQ NIDTLQRSNI DNSQMQNPNQ  660
EVKEPF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1446451ERRRRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008777260.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
TrEMBLA0A2H3X2B90.0A0A2H3X2B9_PHODC; transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like isoform X1
STRINGXP_008777260.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35273775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-37phytochrome interacting factor 3