PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s1026291g001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family bHLH
Protein Properties Length: 451aa    MW: 49220.1 Da    PI: 7.151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s1026291g001genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.000173453771754
                         HHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH  17 NsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++   L++l+ +      +K + a++L +A++YIk L
  PDK_30s1026291g001 345 GDRVTALQQLVSPF-----GKTDTASVLHEAIDYIKFL 377
                         55666677777776.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.769328377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-11338396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.54E-5338381No hitNo description
Gene3DG3DSA:4.10.280.101.5E-7338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MAEEFQRGIC SSSSWWSTAR TSSFDGPMLS TSVSCSTELT GIGGSVNWAV PADMVEVKSR  60
SSDESPGSVS NSSTTFQDTH KPQASDQLVA DPIMDSTLQI PGFGLSSPSI NWHQPLFTTS  120
GRSETNLHAL LQEGMNSRPN LQQEPAIESN QTHMNVESSS FNLLKDLNQG LMQDKHHYSS  180
SINSYPLFPA SFGLPPTLLQ GLLGPGMKPQ QPFNNQQMDS PMSYQGGLNE SLQSQVAKLP  240
QFNMALPMKQ QLHFANNTPF WNPSATATTE TTSNLYSSTP TQIAPHAFKG KTNCSKLLVK  300
SNSEGVGDSS SNAMKKSGNE PAFKKPRIET PSPLPTFKVR KEKLGDRVTA LQQLVSPFGK  360
TDTASVLHEA IDYIKFLHEQ VGVLSAPYLK NGHQIQHSQN LDKTRDGEGS KLDLKSRGLC  420
LVPLSSTFAV ASETPVDFWT PTFGGTYRWR V
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026666063.10.0transcription factor bHLH112-like
TrEMBLA0A3Q0IGD50.0A0A3Q0IGD5_PHODC; transcription factor bHLH112-like
STRINGXP_008810246.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.13e-56bHLH family protein