PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041832.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 254aa    MW: 26192.5 Da    PI: 7.6349
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041832.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.57.2e-41291291100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 
                  +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l
  Pbr041832.1  29 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYL 126
                  7***********************9989********************************************************************99 PP

       DUF260  98 kee 100
                  +++
  Pbr041832.1 127 QAH 129
                  986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.1428130IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-4029127IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MNPTNPNGGD GSGGGSSSSG GGGTGSGSPC GACKFLRRKC VPGCIFAPYF DSEQGAAHFA  60
AVHKVFGASN VSKLLLHIPV HKRLDAVVTI CYEAQARLRD PVYGCVAHIF ALQQQVVNLQ  120
AELSYLQAHL ATMELPSPPP PPPPPSAAAL ITPPQFSISD LPSAVSSMPA SYDLSSLFEP  180
MVMQPWAMQQ RALHDPRHHH QFGGGSSGPG SPAGGGGGDL QSLARELLHR HSSSPSPGSV  240
PCSEGSPSHS HPK*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00314DAPTransfer from AT2G45420Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009347043.10.0PREDICTED: LOB domain-containing protein 18-like
RefseqXP_009379266.10.0PREDICTED: LOB domain-containing protein 18
SwissprotO221314e-86LBD18_ARATH; LOB domain-containing protein 18
TrEMBLM5X2B01e-109M5X2B0_PRUPE; Uncharacterized protein
STRINGGLYMA03G02620.12e-95(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.12e-82LOB domain-containing protein 18