PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr041026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 504aa    MW: 56133.6 Da    PI: 4.9085
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr041026.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.11.9e-35201112102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++ ++sws+ +nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+++ 
   Pbr041026.1  20 FLNKTYDMVDDHSTDAVVSWSNGNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTVS 107
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Pbr041026.1 108 RRKP 111
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3813104IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.85E-3415109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004159.8E-6016109IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.1E-3020109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-192043IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-195870IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405983IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.3E-197183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MEGVEDAASV INSANTPPPF LNKTYDMVDD HSTDAVVSWS NGNNSFVVWN VPEFSRDLLP  60
KYFKHNNFSS FVRQLNTYGF RKVDPDRWEF ANEGFLRGQK HLLKTVSRRK PAHVQSHQQP  120
PPQVQSSQVG PCVEVVNPGL EEEVERLKRD KNTLMQELVR LRQQQQATDN QLHNVGQRMQ  180
GMEQRQQQMM SFLAKAMHSP GFLSQLVQHQ NENNRRITGS NKKRRLPRQE DEILVGNLGS  240
KVLDGQMVKY QPSMNEAAKA MLRQILKMNT SPKLEPSLIN PDAFLIDNVP SNATDSRNTS  300
SRNLGVTLSE VPPISAECYM PEESRFPVSC HSTAISEIQS SPYAVANSVK ETQVLEENMH  360
NFQQDTAIPE LTQMQGIVSE SNVEIPNANF ISSETGNAGY MGMSAGLDGR LPTDIEPFSP  420
EPDSDALPDG VSSLPSINDI FWEQFLTASP LPGDTDEISL SSDDGVAVNQ DLQLGKENGW  480
EKSQHMNHIT EQMQLLASGS RTG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-241810927129Heat shock factor protein 1
5d5v_B4e-241810927129Heat shock factor protein 1
5d5v_D4e-241810927129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr041026.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532530.0AB853253.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH235.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009361739.10.0PREDICTED: heat stress transcription factor A-1-like
SwissprotQ84T611e-165HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A498JRN80.0A0A498JRN8_MALDO; Uncharacterized protein
STRINGXP_009361739.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-130heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]