PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr040546.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 332aa    MW: 36258.5 Da    PI: 6.6724
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr040546.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44e-18248281235
         GATA   2 snCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  s+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pbr040546.1 248 SHCGVQKTPQWRTGPNGAKTLCNACGVRYKSGRL 281
                  69****************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169925.8E-844321IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011410.449241277IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-14241295IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.14E-11248303No hitNo description
PfamPF003204.3E-16248281IPR000679Zinc finger, GATA-type
CDDcd002023.51E-13248294No hitNo description
Gene3DG3DSA:3.30.50.101.9E-13248279IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MECVEAALKT SIRKEMAVKV NGPQAVVFDD FLWGSAVVNG QNACDDFSVD DLLDFSNENG  60
FFETEGEEED DKEKVKAVVS LSPQKQNQET EKPNLSEKNE PASELSVPAD DLVNLEWLSH  120
FVEDSFSEFA TALPAGFVPE NPKSEKRPDP ETAIPEKPCF KTPVPAKARS KRTRTGGRVW  180
SLGSPSLTES SSSSSSSSSS SPSNPWLIYP ATQNQEPGEP VLSVEKPPKK PKRRLVDGSS  240
SQPPRRGSHC GVQKTPQWRT GPNGAKTLCN ACGVRYKSGR LLPEYRPACS PTFSSELHSN  300
HHRKVLEMRR KKEGPGTPEP GLTRPPVVPS F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1227233PKKPKRR
2227234PKKPKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346302.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH576e-88GATA5_ARATH; GATA transcription factor 5
TrEMBLD9ZIZ10.0D9ZIZ1_MALDO; GATA domain class transcription factor
STRINGVIT_04s0023g02880.t011e-105(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.23e-81GATA transcription factor 5