PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039901.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 604aa    MW: 63387.4 Da    PI: 8.856
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039901.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.58e-411953212104
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.......... 88 
                  +++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+p+i+++tgt++++a+++  + s +ss+s+ s +          
  Pbr039901.1 195 PVAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEPSIIAATGTGTIPANFStLNISLRSSGSSLSFPpsksaphsfh 292
                  5789*****************************************************************99987777777777444445555667777 PP

          TCP  89 ........................kaaksaakskksqksa 104
                                          +           q ++
  Pbr039901.1 293 galalahhphydegcahsglmgfhQ-----------QLQQ 321
                  7777777777776655443333221...........2222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-39200333IPR005333Transcription factor, TCP
PROSITE profilePS5136928.023201255IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MDLSNFQPNN NKKQQQQQQQ NNNTSTSTSN NTTTSLHHHH LLPHLQQKFQ HHHQQQHPSS  60
SSSYSSSFVG PFDGIRSSSG GGGGGGGPRS MSSISIQAGL TATSQSTPPP PTTSAPSSSS  120
FSSSSSTSSP SSTSTSTAPP QLVDASLAMA TRSDPHPPTR PGSLLDSAKN NQIQQQLTIS  180
PATTPPPAAA ATTTPVAKRS TKDRHTKVEG RGRRIRMPAT CAARVFQLTR ELGHKSDGET  240
IEWLLQQAEP SIIAATGTGT IPANFSTLNI SLRSSGSSLS FPPSKSAPHS FHGALALAHH  300
PHYDEGCAHS GLMGFHQQLQ QQQHPQHHHQ PHQSPLMTAD QIAEALPSGG RDSGGGGGGE  360
STENYMRKRF REDLFKDDNQ ERGESGSGGG GGSPSRNKAF KGGSSCGLQL PKQQQQGAEL  420
GSYSSGVLRP SNILPATAMW AVAPAPTSGA GSTFWMLPVT AGSAVPSMAT GTSGAGPSEA  480
AQMWTFPSAT ASHVSTLQAP LHFMPRFNLP GSLEFQQAAA GSRGSPLQLG SMLMQQQPSQ  540
HLGLGLSESN LGMLAALNAY SRGGLNMNSD HQQSHHHPLD HHQQQHHQHQ TTDSGDEGPN  600
SSQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1348356GGRDSGGGG
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039901.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009345828.10.0PREDICTED: transcription factor TCP8-like isoform X1
RefseqXP_009345851.10.0PREDICTED: transcription factor TCP8-like isoform X1
TrEMBLA0A498HVJ70.0A0A498HVJ7_MALDO; Uncharacterized protein
STRINGXP_009345828.10.0(Pyrus x bretschneideri)
STRINGXP_009345851.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.14e-68TCP family protein