PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr039609.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 484aa    MW: 52572.5 Da    PI: 8.5278
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr039609.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.54e-37712312132
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssa.sec.. 73 
                   g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       +++sa      
  Pbr039609.1  71 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnnssfpdtpkqlsdekrascergGFDSAeI-Efd 167
                  689*************************************************************888888888888777777776664444421.233 PP

          TCP  74 .eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmri 132
                   + ++++s+ +n+s++ + +++a+s+ s++s+ s l+l++      r+kar+rarer ++++ +
  Pbr039609.1 168 qNYHQNQSQPGNQSQHLSLSKSACSSTSETSKGSGLSLSRseirVNRSKARERARERAAKDKEK 231
                  3556666666677777777777788888888888888887533355599999999987776655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-4472231IPR005333Transcription factor, TCP
PROSITE profilePS5136931.34573131IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.115211231IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEVEEIQASN KFPRIGNGSS RDHKPSPEDE DNQDPSCLDL KRAAAATAAA DAGNRLRGWH  60
HSRIIRVSRA SGGKDRHSKV WTSKGLRDRR VRLSVTTAIQ FYDLQDRLGY DQPSKAVEWL  120
IKAAADAIAE LPSLNNSSFP DTPKQLSDEK RASCERGGFD SAEIEFDQNY HQNQSQPGNQ  180
SQHLSLSKSA CSSTSETSKG SGLSLSRSEI RVNRSKARER ARERAAKDKE KESIESTYPG  240
NINNISQQNG SFTELLTAGI GNIHNNNSPT ASAQHHQQNH GGGGEPILFH KAAAPMDYFS  300
PGLLGLSSSA RTHHSSGFSG QIHLGMNSIP QTMSVVSPFN VSGEHHHGHH SSELQHFSFV  360
PDLIPVTTSS QPGSGVDYNL NFSISSSGGL AGFNRGTLQS NSSSSPSLLP HHLQRFSPID  420
GSSNVPFFIG AAAAAASPTM ENHHHHHHHQ QHQQQFPGGF DRRLQQLYGD GTRHSDHKGK  480
AKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A6e-2478132155Putative transcription factor PCF6
5zkt_B6e-2478132155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr039609.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB5310190.0AB531019.1 Malus x domestica MdTCP2A mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009360918.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_009360919.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_009360920.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_009360921.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_009360922.10.0PREDICTED: transcription factor TCP2-like
TrEMBLD5MRQ00.0D5MRQ0_MALDO; MdTCP2A protein
STRINGXP_009360918.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.26e-45TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2