PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037242.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 505aa    MW: 56207.9 Da    PI: 4.6056
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037242.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.24.2e-36211122102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws+++nsfvv++  ef++++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll+++ 
   Pbr037242.1  21 FLNKTYDMVDDPSTDTVVSWSKSNNSFVVWNVPEFSRDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKTVS 108
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Pbr037242.1 109 RRKP 112
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3914105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.07E-3417110IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.1E-6217110IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3121110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-202144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-205971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.6E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 505 aa     Download sequence    Send to blast
MERVEDVASV FNSANTPPPP FLNKTYDMVD DPSTDTVVSW SKSNNSFVVW NVPEFSRDLL  60
PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLKTVSRR KPAHVQNHQQ  120
QPPQVQSSQV GACVDVGNPG LEEEVESLKR DKNSLMQELV RLRQQQQATE NQLHNVGQRM  180
QGMEQRQQQM MSFLAKAMHN PGFLSQLVQH QNENNRLITG SNKKRRLPRQ EDEILVGNLG  240
SKVLDGQMVK YQPSMNEAAK AMLRQILKMN TSPKLEPSMI NPDAFLIDNV PSNATDSMNT  300
SSRILGVTLS EVPPISAECD MPDESIFPVS CHSTGISEVQ SSPFAVSNSV KETQVLEENM  360
LNFQQDPVIP ELTQMQGIVP ESNVEIPNAN FINSETGNAG YMGMSAGLDG RLPTDIDPFS  420
PEPDAETLPD GVSSLPSIND IFWEQFLTAS PLPGDTDEIS LSSDDGVTVN QDLQLGKENG  480
LDKSQHMNYI TEQMQLLASG SRIG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B9e-261911027129Heat shock factor protein 1
5d5v_B9e-261911027129Heat shock factor protein 1
5d5v_D9e-261911027129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr037242.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8532531e-138AB853253.1 Pyrus pyrifolia mRNA, microsatellite: TsuENH235.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344306.10.0PREDICTED: heat stress transcription factor A-1b-like
RefseqXP_009344307.10.0PREDICTED: heat stress transcription factor A-1b-like
SwissprotQ84T611e-160HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A498JRN80.0A0A498JRN8_MALDO; Uncharacterized protein
STRINGXP_009344306.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-133heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]