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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
Previous version:
v3.0
v4.0
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pbr037101.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 364aa MW: 41803.7 Da PI: 9.1298 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.4 | 1.2e-20 | 13 | 53 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n++ r++tf kRr+gi+KKA+E S+LC+++v++ii++++ Pbr037101.1 13 IANERSRKTTFQKRRKGIMKKAYEFSTLCEVDVCMIIYGPK 53 89*************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.0E-20 | 3 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.918 | 3 | 53 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 6.53E-24 | 4 | 81 | No hit | No description |
SuperFamily | SSF55455 | 1.24E-21 | 4 | 100 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-10 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-19 | 13 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-10 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MNMGRGRLNM ELIANERSRK TTFQKRRKGI MKKAYEFSTL CEVDVCMIIY GPKLTDRPPE 60 LQTWPKNPEE VSRIINKYKA STMCKPAKKT FDLSDLLMDR KNKVYADIYR KRKEMYETKY 120 PAWDERINTF SESQLEALLN ALDAKLESGK RILLNRKKEA AGHQILVMKK EAPTLLMGGK 180 PDVGESSSRK HPCNYEEDQN HMSSFSNNMV DHMLQQFPHQ PYDQMLQFDN SNEYLSNLLA 240 PNPGPTAMWM LRESNCSLQF SAGASGSNSQ FPVAGNQGNF SDPMMIHSTV ENTNMNMLMV 300 NNNLNPPRSS YMSQQYYARL MQPAVPYMQY PVMPASISSH PVQLRASQAK DDQYQDVNHY 360 LWS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Pbr037101.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009341327.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL82 | ||||
TrEMBL | A0A498HFG8 | 0.0 | A0A498HFG8_MALDO; Uncharacterized protein | ||||
STRING | XP_009344134.1 | 0.0 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 1e-24 | M-type_MADS family protein |