PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pbr037101.1

Organism

Pyrus bretschneideri

Taxonomic ID

225117

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus

Family

M-type_MADS

Protein Properties

Length: 364aa MW: 41803.7 Da PI: 9.1298

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pbr037101.1	genome	CPETR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	64.4	1.2e-20	13	53	3	43
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n++ r++tf kRr+gi+KKA+E S+LC+++v++ii++++ Pbr037101.1 13 IANERSRKTTFQKRRKGIMKKAYEFSTLCEVDVCMIIYGPK 53 89*************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	3.0E-20	3	60	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	19.918	3	53	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.53E-24	4	81	No hit	No description
SuperFamily	SSF55455	1.24E-21	4	100	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.9E-10	5	25	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.5E-19	13	52	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	8.9E-10	25	40	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence Send to blast
MNMGRGRLNM ELIANERSRK TTFQKRRKGI MKKAYEFSTL CEVDVCMIIY GPKLTDRPPE 60 LQTWPKNPEE VSRIINKYKA STMCKPAKKT FDLSDLLMDR KNKVYADIYR KRKEMYETKY 120 PAWDERINTF SESQLEALLN ALDAKLESGK RILLNRKKEA AGHQILVMKK EAPTLLMGGK 180 PDVGESSSRK HPCNYEEDQN HMSSFSNNMV DHMLQQFPHQ PYDQMLQFDN SNEYLSNLLA 240 PNPGPTAMWM LRESNCSLQF SAGASGSNSQ FPVAGNQGNF SDPMMIHSTV ENTNMNMLMV 300 NNNLNPPRSS YMSQQYYARL MQPAVPYMQY PVMPASISSH PVQLRASQAK DDQYQDVNHY 360 LWS*

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence Send to blast

MNMGRGRLNM ELIANERSRK TTFQKRRKGI MKKAYEFSTL CEVDVCMIIY GPKLTDRPPE  60
LQTWPKNPEE VSRIINKYKA STMCKPAKKT FDLSDLLMDR KNKVYADIYR KRKEMYETKY  120
PAWDERINTF SESQLEALLN ALDAKLESGK RILLNRKKEA AGHQILVMKK EAPTLLMGGK  180
PDVGESSSRK HPCNYEEDQN HMSSFSNNMV DHMLQQFPHQ PYDQMLQFDN SNEYLSNLLA  240
PNPGPTAMWM LRESNCSLQF SAGASGSNSQ FPVAGNQGNF SDPMMIHSTV ENTNMNMLMV  300
NNNLNPPRSS YMSQQYYARL MQPAVPYMQY PVMPASISSH PVQLRASQAK DDQYQDVNHY  360
LWS*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Pbr037101.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009341327.1	0.0	PREDICTED: agamous-like MADS-box protein AGL82
TrEMBL	A0A498HFG8	0.0	A0A498HFG8_MALDO; Uncharacterized protein
STRING	XP_009344134.1	0.0	(Pyrus x bretschneideri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	1e-24	M-type_MADS family protein