PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036788.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 357aa    MW: 41192 Da    PI: 4.5826
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036788.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.34.6e-37341262103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y+i++d+++++++sws+++nsfvvld+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +gkk+ll++i+
   Pbr036788.1  34 FLNKTYDIVDDPSTNHIVSWSRDNNSFVVLDPNSFSMSLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANEAFLRGKKHLLKNIR 121
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
   Pbr036788.1 122 RRKAS 126
                   **976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3929123IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3530123IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5930123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-203457IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.4E-3234123IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-207284IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043407397IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-208597IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNLDQDPESF SSSSAVADHP LPLERLYDQG PPPFLNKTYD IVDDPSTNHI VSWSRDNNSF  60
VVLDPNSFSM SLLPRYFKHN NFSSFVRQLN TYGFRKVDTD RWEFANEAFL RGKKHLLKNI  120
RRRKASHLPK SSQKTLDSCV EVGRFGLDIE IDQLRRDKQV LMGELVKLRQ QQQATRVYIQ  180
GMEDRLKRTE MKQQHMLSFL AKAMQNPNFV QQLSQQTDFR KELEEAITKK RRRTIEQGLS  240
NVEVDELGQV GGETFVKVEP QEYGNISDQF EVSELNQFAM DMPGVSGTQN VLGEEECTEK  300
EEERESRGKD LDKGFWQDLF NESIDEEIDL LGVQEEDEED VDVLIEELGF LAPSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A7e-263212618123Heat shock factor protein 1
5d5u_B1e-253212327129Heat shock factor protein 1
5d5v_B1e-253212327129Heat shock factor protein 1
5d5v_D1e-253212327129Heat shock factor protein 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343960.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-124HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM5XVS40.0M5XVS4_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s09210.11e-151(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-115heat shock transcription factor A6B