PlantTFDB
Plant Transcription Factor Database
PlantRegMap/PlantTFDB v5.0
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr036049.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 306aa    MW: 32721.9 Da    PI: 8.4099
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr036049.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.91.2e-3141081100
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e
  Pbr036049.1   4 SCNGCRILRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQVAVE 101
                  6************************************************************************************************* PP

       DUF260  94 lallkee 100
                  ++l +++
  Pbr036049.1 102 AVLKGQS 108
                  9998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.5E-961285IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.23109IPR004883Lateral organ boundaries, LOB
PfamPF031953.6E-254103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MRISCNGCRI LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLINAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQVAV EAVLKGQSIT PITSEAAANG  120
HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSAVK PKTNKVGSGS GSGCGSGADE  180
SAKPSWTGCS ADKFNRSMSH ESSLSHQSEA AATVDGDSKE SESMISSETA EAELFFRAEP  240
ESARKRTESV QDGELALELT LGLQPQSRAN HVVPVKKRRI EAGFGGVSPA DDGACKIELG  300
LDYVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr036049.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009343384.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-107LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A498HFS40.0A0A498HFS4_MALDO; Uncharacterized protein
STRINGXP_009343384.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-99LOB domain-containing protein 41