PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr034751.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family DBB
Protein Properties Length: 243aa    MW: 26640 Da    PI: 4.8915
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr034751.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.41e-06444539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  C+ +e+ +++  C  ++  lC++C +e H        H++
  Pbr034751.1  4 QCDVCEKAQATVICCADEAALCAKCDVEVHAAnklaskHQR 44
                 7******99*********************65667777765 PP

2zf-B_box31.63.3e-105596237
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg.......H 37
                 + ++C+ +++k + +fC +++ l+C+dC +++H +       H
  Pbr034751.1 55 KLPRCDICQDKAAFIFCVEDRALVCQDCDESIH-SwnsrsanH 96
                 789******************************.334455555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.399147IPR000315B-box-type zinc finger
CDDcd000212.13E-6347No hitNo description
SMARTSM003364.2E-9447IPR000315B-box-type zinc finger
PROSITE profilePS501199.44254101IPR000315B-box-type zinc finger
SMARTSM003362.4E-1454101IPR000315B-box-type zinc finger
PfamPF006435.0E-95597IPR000315B-box-type zinc finger
CDDcd000213.43E-857100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0009651Biological Processresponse to salt stress
GO:0048573Biological Processphotoperiodism, flowering
GO:0080167Biological Processresponse to karrikin
GO:0090351Biological Processseedling development
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003712Molecular Functiontranscription cofactor activity
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MKIQCDVCEK AQATVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLECL SKSNKLPRCD  60
ICQDKAAFIF CVEDRALVCQ DCDESIHSWN SRSANHQRFL ATGIRVALSS GCSKDTEPSS  120
LEPPSSHSSH KIVSTKVPTP QPSGFSSPWG VDDLLQLSDF ESSDKKESFE FGELEWIADM  180
GIFGVEQFPQ KALAAAEVPQ LPPSQATNFT SYRPAKSNSP YKKPRIEMLE DDDDHFTVPD  240
LG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0276970.0JQ027697.1 Malus zumi STO mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009342646.11e-179PREDICTED: salt tolerance protein-like
SwissprotQ962882e-96BBX24_ARATH; B-box zinc finger protein 24
TrEMBLD9ZIX31e-174D9ZIX3_MALDO; COL domain class transcription factor
STRINGVIT_05s0102g00750.t011e-121(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.12e-94DBB family protein