PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr032616.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family DBB
Protein Properties Length: 244aa    MW: 26511 Da    PI: 5.1672
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr032616.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.52.3e-07444539
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                  C+ +e+ +++  C  ++  lC++C +e H        H++
  Pbr032616.1  4 QCDACEKAPAKVICCADEAALCAKCDVEVHAAnklaskHQR 44
                 7*****************************65667777765 PP

2zf-B_box31.63.4e-105597238
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                 + ++C+ +++k + +fC +++ l+C+dC +++H+       H+
  Pbr032616.1 55 KLPTCDICQDKAAFIFCVEDRALVCQDCDESIHSAnsrsanHQ 97
                 789******************************6556666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003366.0E-11147IPR000315B-box-type zinc finger
PROSITE profilePS501199.641147IPR000315B-box-type zinc finger
CDDcd000217.29E-7347No hitNo description
PfamPF006432.0E-5444IPR000315B-box-type zinc finger
SMARTSM003361.9E-1554101IPR000315B-box-type zinc finger
PROSITE profilePS501199.39954101IPR000315B-box-type zinc finger
PfamPF006438.8E-95597IPR000315B-box-type zinc finger
CDDcd000216.52E-859100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKVQCDACEK APAKVICCAD EAALCAKCDV EVHAANKLAS KHQRLLLECL SKSNKLPTCD  60
ICQDKAAFIF CVEDRALVCQ DCDESIHSAN SRSANHQRFL ATGIRVALST GCCNDTEPSS  120
LEPSSSHSSH KIVSTKIPTP QASGISSPWG VDDLLQLSEF ESSDKKESFE FGELEWIADM  180
GVFGKEQFPQ KAMAAVDEVP KLPVSQSTNF TSYRPAKLNN PYKKPRIELL EGDDGHFTVP  240
DLG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ0276970.0JQ027697.1 Malus zumi STO mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357825.11e-180PREDICTED: salt tolerance protein-like
SwissprotQ962884e-90BBX24_ARATH; B-box zinc finger protein 24
TrEMBLD9ZIX31e-158D9ZIX3_MALDO; COL domain class transcription factor
STRINGVIT_05s0102g00750.t011e-114(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34383157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06040.14e-81DBB family protein