PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr031730.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 253aa    MW: 28716.1 Da    PI: 4.4914
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr031730.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.7e-05113135123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+F++   L  H  +H
  Pbr031730.1 113 YKCETCDKVFRSYQALGGHRASH 135
                  9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-11113137IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93113135IPR007087Zinc finger, C2H2
SMARTSM003550.012113135IPR015880Zinc finger, C2H2-like
SuperFamilySSF576677.23E-7113135No hitNo description
PROSITE patternPS000280115135IPR007087Zinc finger, C2H2
SuperFamilySSF576677.23E-7169196No hitNo description
PfamPF139121.3E-6173196IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016174196IPR007087Zinc finger, C2H2
SMARTSM003555.8174196IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176196IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MHSSLDSAVV HDDSDSESHP RNPTRRRSKR RRKVIGKSSP LPFEAEQVSS VSDTFSTEDV  60
ARCLIMLSMD KWKKVKVKNG VDESVEEEEE DESDSGGRSD FRIKDRVRSQ GKYKCETCDK  120
VFRSYQALGG HRASHKKTIK TQVFDDYEEE EDEDFEEDDG QDGNQDVVEN HRTFECCVCF  180
RQFDSGQALG GHKKVHYYNN LTNNAPARNV NLSSSSTNFV DNLVIDLNLP APEEEEEEDE  240
EVSQVEFSTV SD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr031730.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009340565.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLD9ZIS01e-140D9ZIS0_MALDO; C2H2L domain class transcription factor
STRINGXP_009340565.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-33C2H2-like zinc finger protein