PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030670.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 264aa    MW: 28638.6 Da    PI: 8.564
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030670.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.51.6e-3141081100
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C++lr++C+++C ++p++     p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q+++e
  Pbr030670.1   4 SCNGCRILRKGCSENCSIRPCLqwiksPEAQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQVAVE 101
                  6************************************************************************************************* PP

       DUF260  94 lallkee 100
                  ++l +++
  Pbr030670.1 102 AVLKGQS 108
                  9998775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.2293109IPR004883Lateral organ boundaries, LOB
PfamPF031953.4E-254103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MRMSCNGCRI LRKGCSENCS IRPCLQWIKS PEAQANATVF LAKFYGRAGL MNLVNAGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQVAV EAVLKGQSIT PITSEAAANG  120
HGPPLKAYDI RHVSKDENSA ASNDPQKVKT RYRFKRSAVK PKTNKSEAAA NVDGDSKESE  180
SMISSETAEA ELFSRAEPEP ARKRREPVQD GELALELTLG LEPPSRGHHV VPVKKRRIEA  240
EFGGSSPADD GACKMELGLD YVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030670.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009357119.10.0PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-105LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A498HFS41e-174A0A498HFS4_MALDO; Uncharacterized protein
STRINGXP_009357119.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.18e-99LOB domain-containing protein 41