PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr030369.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 326aa    MW: 35164.2 Da    PI: 7.4424
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr030369.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.80.00076124146123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+++F++   L  H  +H
  Pbr030369.1 124 YECKTCNRTFPSFQALGGHRASH 146
                  99**********99999998887 PP

2zf-C2H213.10.00028212234123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F++   L  H+r+H
  Pbr030369.1 212 HECSICGSEFTSGQALGGHMRRH 234
                  78********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.28E-9123146No hitNo description
PfamPF139123.0E-13123148IPR007087Zinc finger, C2H2
SMARTSM003550.052124146IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658124151IPR007087Zinc finger, C2H2
PROSITE patternPS000280126146IPR007087Zinc finger, C2H2
SuperFamilySSF576678.28E-9207234No hitNo description
PROSITE profilePS501579.868212239IPR007087Zinc finger, C2H2
SMARTSM003550.019212234IPR015880Zinc finger, C2H2-like
PfamPF139123.8E-11212235IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEGQEELVVT NEQASQMSMI KGKRTKRQRP QSPNGVVTAA VTSSSSSACG VATIGGGDHE  60
YNYYGSSFTS PTTSSEIYES TEEEEDMANC LILLAQGDHG NPKQIIEERL AQNINMGKAG  120
FLVYECKTCN RTFPSFQALG GHRASHKKPK SMSSTEEIIK KLPPPAAAPP TLHSITATTF  180
EKFEDQSKQF IKYKSSPSPA IPIQIGNKPK IHECSICGSE FTSGQALGGH MRRHRTASAA  240
TNSNSTSGGP GGATATHVAV SNSSNDMIGT STKLQRNVLP LDLNLPAPED HDHHHHHHRE  300
SKFQFVPTQQ TTLVFNAPAL VDCQY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr030369.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356940.10.0PREDICTED: zinc finger protein ZAT5
TrEMBLA0A498IK900.0A0A498IK90_MALDO; Uncharacterized protein
STRINGXP_009356940.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-50C2H2 family protein