PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027488.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 478aa    MW: 52905.6 Da    PI: 9.4741
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027488.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP141.94.8e-441603052130
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssaseceaesssssas 83 
                   gkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aik+l +                 +          ++++s++
  Pbr027488.1 160 SGKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKTAIKDLKQHllvspkedysstnggaT----------AKVNSSE 247
                  69**************************************************************99886554433222110..........1111111 PP

          TCP  84 nsssg..............kaaksaakskksqksaasalnlak.esrakarararertrekm 130
                      +              +aak + +   ++++++ +l++ + esr +arararertrek 
  Pbr027488.1 248 ----SttgdvaskimepysSAAKGDISVGLAREKKNRKLSVVArESRMEARARARERTREKL 305
                  ....0112344566678756666666666666666666666555****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-41161305IPR005333Transcription factor, TCP
PROSITE profilePS5136937.183162220IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.67287304IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MFPSSSTTSN SQLPFLCDDS HTNGIIDDFH QNPNSISSHG GHHQYYSQYY YSDDQQQQQA  60
PDFLEHDGML LSYLLSQQQL LIDNSSTTNV ATHSNHIRAH SSAKISIVDS NSNKTMELIN  120
HADQITVIPA ADSQIKKNNV KMNGEGGGEK KAKFARKRAS GKKDRHSKIY TAQGPRDRRM  180
RLSLQIARKF FDLQDMLGFD KASKTIEWLF TKSKTAIKDL KQHLLVSPKE DYSSTNGGAT  240
AKVNSSESTT GDVASKIMEP YSSAAKGDIS VGLAREKKNR KLSVVARESR MEARARARER  300
TREKLMRIRG FDQDHQSTKQ SHKHQEQQNP NELFETAGMM NSMMMSMNRP NDGQKIVGRT  360
SSSCGGAESS FLNFAFSQHA EASGANSEDC DFPGNWGAIN NTKNIITGNV LQVVQNPTSY  420
PKQQNPSSIF GTGTQEQNPN SIFLNTLAKA QDQNSTTSSN FEINSNISTL QPLFTGN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr027488.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336654.10.0PREDICTED: transcription factor TCP18
TrEMBLA0A498I7Y30.0A0A498I7Y3_MALDO; Uncharacterized protein
STRINGXP_009336654.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.16e-31TCP domain protein 12