PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr027099.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 534aa    MW: 57581.4 Da    PI: 5.5179
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr027099.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11348390754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Pbr027099.1 348 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 390
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58341390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16344410IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-13347396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-9347390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-15348403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.05E-13348394No hitNo description
CDDcd048734.99E-8462522No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010440Biological Processstomatal lineage progression
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050826Biological Processresponse to freezing
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MLPRLNGGVW MDDREDRDSV SWTRTSAAAA GSTENKDEMG SSLSTFKSML EVEDDWYMAA  60
NNSIQGHSDV RDITFSPSFA DPESLLLNPV DSSSSCSPSS SVFNNLDPNQ VHYYMPQNPN  120
LSSLLNVVPN NPLDHGFDLG CDIGFLDTQA SGGGSSMMNR GGGVLSGFND LSSNNQMNAQ  180
NLGSNLQFST TRMPQVLENS SKFSGFLGVD DGSANALFPN RPKLLRPLES FPSVGVQPTL  240
FQKRAALRKN ISDGGGNLGV LGSQGGLVLN QGDVQNEKKR KMSGGDDVDD LSFDGSGLNY  300
DSDEFTENTK VDDGAKNGGN SSNANSTVTG GGGGHKGKKK GLPAKNLMAE RRRRKKLNDR  360
LYMLRSVVPK ISKMDRASIL GDAIEYLKEL LQRINNLHNE LESIPPGSAL TPTGNTFHPL  420
TPTPATLPNR IKEELCPSSL PSPNGQAARV EVRLREGRAV NIHMFCGRRP GLLLSTMRTL  480
DNLGLDIQQA VISCFNGFAM DVFRAEQCKE GQDVDPDQIK AVLLDSIGFH GMM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337355KKKGLPAKNLMAERRRRKK
2349356ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF4952020.0EF495202.1 Malus x domestica bHLH transcriptional factor (ICE1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009337514.10.0PREDICTED: transcription factor ICE1-like
RefseqXP_009373630.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-138ICE1_ARATH; Transcription factor ICE1
TrEMBLB2BF970.0B2BF97_MALDO; BHLH transcriptional factor
STRINGPOPTR_0012s10780.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-130bHLH family protein