PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr026562.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 602aa    MW: 62816.6 Da    PI: 8.2052
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr026562.3genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP128.66.1e-401953303114
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 
                  ++k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa++ai++ tgt++++a+++  + s +ss+s+ s++           
  Pbr026562.3 195 VAKRSTKDRHTKVEGRGRRIRMPATCAARVFQLTRELGHKSDGETIEWLLQQAEHAIIATTGTGTIPANFStLNISLRSSGSTLSAPpskssphsfpg 292
                  689*****************************************************************999877888888885555566666788888 PP

          TCP  89 ......................kaaksaakskksqksaasalnlakes 114
                                        +          +q++++++++ +++ 
  Pbr026562.3 293 alalahhphydegfahsgllgfH----------QQHQQQQHQQHHHQP 330
                  88888888888766544443331..........222222222222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-39199332IPR005333Transcription factor, TCP
PROSITE profilePS5136927.342200254IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001047Molecular Functioncore promoter binding
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDLSNFQPNN NKKQQQQQTN NTSTSTSNNN NTSLQHHHLL PHLQQKFQHH HSSSSSSSSS  60
SSSHFVGPFD GIRSSSGGGG GGGGPPFVGS ISIQAGLTTT SHSTPPPPPT SVPSSSSFSS  120
SSSTSSPSST STSTAPPPHL VDASLAIATR SDPHPPTRPA SLLDSAKNNQ TQQQLTISPA  180
TTTAPSAPAA PATQVAKRST KDRHTKVEGR GRRIRMPATC AARVFQLTRE LGHKSDGETI  240
EWLLQQAEHA IIATTGTGTI PANFSTLNIS LRSSGSTLSA PPSKSSPHSF PGALALAHHP  300
HYDEGFAHSG LLGFHQQHQQ QQHQQHHHQP HQSPLITADQ IAEALPSGGG DSAGGGGGES  360
TENYMRKRFR EDLFKDDNQG QGESGSGDGG GSPSRNKAFK GASSSGLQLP KQQQQGAEVG  420
SSGVLRPSNI LPATAMWAVA PAPTSGAGNT FWMLPVTAGP GVPSMATATF GAGPSEAAQM  480
WTFPSSTSSH GSTLQAPMHF MPRFNLPGSL EFQPAAAGGR ANPLQLGSML MQQPPSQHLG  540
LGVSESNLGM LAALNAYSRG GLNMNSDQHQ QNHHHPLDHH QQQQHQPQTT DSGDEAPNSS  600
Q*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr026562.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963233.10.0transcription factor TCP8
TrEMBLA0A498J9860.0A0A498J986_MALDO; Uncharacterized protein
STRINGXP_009355280.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF60773050
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-70TCP family protein