PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025353.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 159aa    MW: 17994.6 Da    PI: 6.1261
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025353.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.67.2e-192374256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+G+r+++ +g+++AeIrdps ng  +r +lg+f taeeAa+a+++a+  ++g+
  Pbr025353.1 23 RYRGIRRRP-WGKFAAEIRDPSRNG--ARLWLGTFETAEEAARAYDRAAFGFRGH 74
                 7********.**********98887..**********************988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.5E-312382IPR001471AP2/ERF domain
PfamPF008475.8E-132374IPR001471AP2/ERF domain
CDDcd000181.37E-282383No hitNo description
PROSITE profilePS5103224.8692381IPR001471AP2/ERF domain
SMARTSM003805.1E-362387IPR001471AP2/ERF domain
SuperFamilySSF541715.1E-232382IPR016177DNA-binding domain
PRINTSPR003671.8E-112435IPR001471AP2/ERF domain
PRINTSPR003671.8E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MEGKRGPENN NQQREPKVRD QNRYRGIRRR PWGKFAAEIR DPSRNGARLW LGTFETAEEA  60
ARAYDRAAFG FRGHLAILNF PNDYQHHNPS SSLSTLSSSS SSASSSSLFP GVDPGRRINF  120
GRVQEEDEVI EFEYLDNNLL EDLLDTKEDN HTQGQPTQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-282013911114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025353.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354980.11e-114PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC57e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A498JSV02e-81A0A498JSV0_MALDO; Uncharacterized protein
STRINGXP_009354980.11e-113(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-29ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]