PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr025301.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 376aa    MW: 42144.7 Da    PI: 10.1014
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr025301.2genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.12.7e-31309366359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ e+p+++++tYegeHnh+
  Pbr025301.2 309 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEEPSMLIVTYEGEHNHP 366
                  99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105336.2E-7282305IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.9E-33295367IPR003657WRKY domain
PROSITE profilePS5081130.067302368IPR003657WRKY domain
SuperFamilySSF1182904.18E-27305367IPR003657WRKY domain
SMARTSM007742.0E-38307367IPR003657WRKY domain
PfamPF031063.2E-27309366IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MEEVEEANKT AVESCHRVLS LLSQPQDQVQ YRNLMVETGK AVSRFKKVIS ILNTGLGHAR  60
VRKLKKLQIP FPERILLDNP NSIGDRPSKT PHFLQSRFPE NPTQDLSLDV KSSLCLGNPS  120
LELSANGKTP IHPAQQVPPA QYHFFQQQQQ QQRQQQQQQH QQQRMLLQQQ QMKPQTEMMY  180
RRSNSGINLN FDSSSYTPTM SSTRSFISSL SIDGSVANFD GNSFHLIGAP ISSDQNSHHK  240
RKCSARGDDG SVKCVGSSGR CHCSKKRSDL SPYGLLGSVI SCNASVKHRV KRSIKVPAIS  300
NKLADIPPDD YSWRKYGQKP IKGSPHPRGY YKCSSMRGCP ARKHVERCLE EPSMLIVTYE  360
GEHNHPRIPS QSTTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-203033651071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr025301.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697983e-74KF669798.1 Gossypium hirsutum WRKY transcription factor 47 (WRKY47) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008372323.20.0probable WRKY transcription factor 21
RefseqXP_028958513.10.0probable WRKY transcription factor 21
SwissprotO043361e-120WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLA0A498JT090.0A0A498JT09_MALDO; Uncharacterized protein
STRINGXP_009354895.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-113WRKY DNA-binding protein 21