PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022939.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family M-type_MADS
Protein Properties Length: 160aa    MW: 18469.5 Da    PI: 10.4979
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022939.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.21.4e-201163350
                 --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS.....EEEEEE CS
       SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg.....klyeys 50
                 i n++ r++tf kR +gilKKA E+S+LCd +v++ii+++++     +l++++
  Pbr022939.1 11 ITNERARKTTFQKRTKGILKKAGEISTLCDLDVCMIIYGPKQsgrspELHTWP 63
                 89*************************************98744444577776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.726151IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-18162IPR002100Transcription factor, MADS-box
CDDcd002666.29E-18279No hitNo description
SuperFamilySSF554557.72E-22298IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-10323IPR002100Transcription factor, MADS-box
PfamPF003197.2E-181152IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
MGRGRLNMEL ITNERARKTT FQKRTKGILK KAGEISTLCD LDVCMIIYGP KQSGRSPELH  60
TWPRNPSEVN RIINKYKAST TCKPAKKTFN LSDLLMDRKT KVHVDTYRAR KEMYEAKYPT  120
WDERIENFSE NELELLLNAL DAKLEAGKRT LLPKRKRPA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr022939.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354489.11e-115PREDICTED: agamous-like MADS-box protein AGL82
TrEMBLA0A498KCQ24e-91A0A498KCQ2_MALDO; Uncharacterized protein
STRINGXP_009354489.11e-114(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.15e-24M-type_MADS family protein