PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022349.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 324aa    MW: 35924.5 Da    PI: 5.6992
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022349.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.58.8e-19242275134
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                  Cs+C++ kTp+WR gp g+ktLCnaCG+++++ +
  Pbr022349.1 242 CSHCQVQKTPQWRTGPLGPKTLCNACGVRFKSGR 275
                  *******************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169928.4E-8317319IPR016679Transcription factor, GATA, plant
SMARTSM004013.3E-14236290IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-14238299No hitNo description
PROSITE profilePS5011411.174240272IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-14240273IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.14E-13241290No hitNo description
PROSITE patternPS003440242267IPR000679Zinc finger, GATA-type
PfamPF003201.7E-16242275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MEYCIEAKAL KSSLRRELAA KSTQHVLLEE LWCATGISGV PCEDFSVDDL LDLSNGEFED  60
GSVEEEEEEE ERESVSVDDE ISNSSSLVLP DSDSGLATQL LVPDDDLAEL EWVSHFVDDS  120
LPDLCLLHTI GTQKPDALLM NRFEPETKPV HLRSPLFPFQ VPVKPRTKRY RPASRVWSSS  180
SSCSPSSSPC SSGFSFSTPC LIFNPVQSMD VFVGEPAAKK QKKKQAVQTG EGSIGGQFQR  240
RCSHCQVQKT PQWRTGPLGP KTLCNACGVR FKSGRLFPEY RPACSPTFSG AVHSNSHRKV  300
LEMRKRKDVG EPEPRLNRMI RSF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378427.10.0PREDICTED: GATA transcription factor 5-like
RefseqXP_009378428.10.0PREDICTED: GATA transcription factor 5-like
TrEMBLD9ZIZ40.0D9ZIZ4_MALDO; GATA domain class transcription factor
STRINGPOPTR_0009s12620.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-53GATA transcription factor 5