PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr022143.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GATA
Protein Properties Length: 332aa    MW: 36229.5 Da    PI: 6.3767
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr022143.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.44.6e-19247281135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  Pbr022143.1 247 CSHCGVQKTPQWRTGPNGAKTLCNACGVRYKSGRL 281
                  *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.2E-853320IPR016679Transcription factor, GATA, plant
SMARTSM004012.8E-17241295IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.426241277IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.23E-14242303No hitNo description
Gene3DG3DSA:3.30.50.103.0E-15245279IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.38E-15246294No hitNo description
PROSITE patternPS003440247272IPR000679Zinc finger, GATA-type
PfamPF003204.9E-17247281IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MECVEAALKT SIRKEMALKA TGPQVVVIDD FLWGGAVVNG QNACDDFSVD DLFDFSNEDG  60
FVETEAEEEG DKEKVKGFVS VSPQKQNQET EKSNLSEKIE PASELSVPAD DLDNLEWLSH  120
FVEDSFSEFS TALPAGFLPE KPKSEKRPDL ETPFPEKPCF KTPVPAKARS KRSRTGGRVW  180
SLGSPSLTES SSSSSSSSSS SPSSPWTIYP ATQNQESAEP VLSVEKPPRK PKRRLVDGSS  240
SQPPRRCSHC GVQKTPQWRT GPNGAKTLCN ACGVRYKSGR LLPEYRPACS PTFSSELHSN  300
HHRKVIEMRR KKEGPGTPEP GMTIAPAVPS F*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378216.10.0PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH573e-88GATA5_ARATH; GATA transcription factor 5
TrEMBLD9ZIZ10.0D9ZIZ1_MALDO; GATA domain class transcription factor
STRINGVIT_04s0023g02880.t011e-108(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110834107
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-81GATA transcription factor 5