PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021952.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 208aa    MW: 23706.2 Da    PI: 4.5117
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021952.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.33.6e-3781311128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 
                  lppGfrF+Ptdeelvv++L++k++  +++  +vi+++++y+++Pw+L+ k+ +e k+wyf+s+r+        +nr+t++gyWk+ g +++++s+   
  Pbr021952.1   8 LPPGFRFDPTDEELVVDFLQRKAALLPFHP-DVIPDLHLYSYDPWELNGKALSEGKQWYFYSRRA--------QNRVTNNGYWKTLGIEEPIFSSsss 96 
                  79*************************999.99**************97777889*******985........589******************9666 PP

          NAM  96 .kgelvglkktLvfykgrap.kgektdWvmheyrl 128
                    +++vg+k+ L+f+ g+ap +g kt+W+mheyrl
  Pbr021952.1  97 nPTKKVGMKRYLTFFVGEAPnSGIKTNWIMHEYRL 131
                  55566**********997762589*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-455172IPR003441NAC domain
PROSITE profilePS5100544.6958173IPR003441NAC domain
PfamPF023659.5E-239131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010089Biological Processxylem development
GO:0043067Biological Processregulation of programmed cell death
GO:0048367Biological Processshoot system development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MGDDQFKLPP GFRFDPTDEE LVVDFLQRKA ALLPFHPDVI PDLHLYSYDP WELNGKALSE  60
GKQWYFYSRR AQNRVTNNGY WKTLGIEEPI FSSSSSNPTK KVGMKRYLTF FVGEAPNSGI  120
KTNWIMHEYR LPSSASDCAS SSTTTTTTSR SSKRRGQSKT EYSGYVLCRV YERDEEDDDD  180
DGTELSCLDE VFLSLDDLDE ISLPNYN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-38517417169NAC domain-containing protein 19
3swm_B4e-38517417169NAC domain-containing protein 19
3swm_C4e-38517417169NAC domain-containing protein 19
3swm_D4e-38517417169NAC domain-containing protein 19
3swp_A4e-38517417169NAC domain-containing protein 19
3swp_B4e-38517417169NAC domain-containing protein 19
3swp_C4e-38517417169NAC domain-containing protein 19
3swp_D4e-38517417169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr021952.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354072.11e-154PREDICTED: NAC domain-containing protein 104-like isoform X2
SwissprotQ8GWK65e-79NC104_ARATH; NAC domain-containing protein 104
TrEMBLD9ZJ881e-123D9ZJ88_MALDO; NAC domain class transcription factor
STRINGXP_009354071.11e-127(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17363395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.19e-75xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]