PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr021888.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 511aa    MW: 55703.3 Da    PI: 4.8319
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr021888.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11337379754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A++Y+k+L
  Pbr021888.1 337 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIDYLKEL 379
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-16333397IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.2E-14336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9336379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.25E-13337383No hitNo description
Gene3DG3DSA:4.10.280.105.0E-15337392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MLPMSSGAAW MGGDEHGTMS WTRNNNNNEA ELRRNDQDSS LGASFSNFKL MLEGDWYTNN  60
ILSNPAQDLH AFSSTQASET ALAPLQPNDS SASCSPSQAF SLDPSQPPQQ FLPPKSFFSS  120
LLNVVCSNPF DSSFDLGCDA GFLGSFQGNQ PSNSSLLMSF TALNSHSQMG TPEFSSSAEF  180
PASRLLPVTD NPNVLDGDIG FEGFDGSAGA QLLNGAKLLF PPMGAQPTLF QKRRQNSGGD  240
GADKLGNLEI SAPRYGGLVE NLEKKKKRNE EGEVEEESLD VSGLNYDSND FNEHSQVEVE  300
DNAKNGGNNS NANCTVTGVE GGDRKGKKKG LPAKNLMAER RRRKKLNDRL YMLRSVVPKI  360
SKMDRASILG DAIDYLKELL QRINDIHNEL DSAPPSSLLP LSTSFHPLTP PPSTLPCCVK  420
EEFCPSSLPS PKTQPKVEVW VREGRTVNIH MFCTRRPGLF LSTMRALDNL DLDIQQAVIS  480
CFNGFTLDVF RAERLPTPLF VPSVEPIELN *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1326344KKKGLPAKNLMAERRRRKK
2338345ERRRRKKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009378034.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-121ICE1_ARATH; Transcription factor ICE1
TrEMBLA0A0S2CW960.0A0A0S2CW96_PRUMU; Inducer of CBF expression b
STRINGVIT_14s0068g01200.t011e-179(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-98bHLH family protein