PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020546.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 221aa    MW: 24008.2 Da    PI: 7.1293
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020546.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP112.84.6e-3556150489
          TCP   4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg.........k 89 
                   ++ + ++hTkv+gR+RRvR++a caar+F+L++eLG+ +d++tieWLl+ a+p+i+++tg+++ +a+  ++ s s+s++ +s +         +
  Pbr020546.1  56 SRRNTRDRHTKVNGRGRRVRMPAMCAARIFQLTRELGHRSDGETIEWLLRHAEPSIIAATGSGTLPAEPISTTSPSVSSQMPSVTcrvqplkslR 150
                  67899*********************************************************988887775555555555444444444443331 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.7E-3059153IPR005333Transcription factor, TCP
PROSITE profilePS5136926.96360114IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MASEMALQPL HKLEDRKPTV LPTAVLTSAT IQTAPSLSQL SDLQLQAQPK PQKQVSRRNT  60
RDRHTKVNGR GRRVRMPAMC AARIFQLTRE LGHRSDGETI EWLLRHAEPS IIAATGSGTL  120
PAEPISTTSP SVSSQMPSVT CRVQPLKSLR SSGQFLYPAA AQAHQAMQLQ LDLCQPMGAD  180
YNAGYRHMPF TSLLLQTGES EVEEGQAEEE VVGVGIGDDE *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020546.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376810.11e-161PREDICTED: transcription factor TCP11
SwissprotQ9SJK73e-36TCP11_ARATH; Transcription factor TCP11
TrEMBLA0A498IFK31e-135A0A498IFK3_MALDO; Uncharacterized protein
STRINGXP_009376810.11e-161(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38193363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37000.16e-36TCP family protein