PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020246.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 463aa    MW: 52896.6 Da    PI: 7.5019
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020246.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1371.6e-421683292135
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssa..sec...eaesss 79 
                  + k+drhski T++g+RdRR+Rls+e+a +fF Lqd LGfdk+skt+eWLl q++paik+l ++               ++s+a  ++c   +    +
  Pbr020246.1 168 TCKRDRHSKINTARGPRDRRMRLSLEVALKFFGLQDALGFDKPSKTVEWLLIQSEPAIKKLSRDhhrqfnykhmvrcakTTSPAtsESCevlS---GV 262
                  689******************************************************************999999999833333333443331...22 PP

          TCP  80 ssasnsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135
                   +a     +              k ++++ k  ++q+++++++ lak sr++arararertrekm+ ++k
  Pbr020246.1 263 DEAP-T--NvnissngkvrsrgiKPSAKERKIVHRQSRKSAFHPLAKASRENARARARERTREKMQRSKK 329
                  2222.1..0112344567777875555555777777777789***********************98865 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.0E-43169326IPR005333Transcription factor, TCP
PROSITE profilePS5136932.723170228IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.314306323IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MFPSHNNNLN ELVPVSYPHV DQSIFHSWPF HHDNSTLTPN SLTILNPNPN SRQQEGGEEN  60
LHQQHQHLPF SLLYFPSPFE DDDVLLFDQQ HHHQEPDHIE LSLHESQEPP YFMKEAAAAA  120
ADDNTVVGND HQKTTTTSVN RKMVDWDSNK KGHRMNMDDQ PQIPRRRTCK RDRHSKINTA  180
RGPRDRRMRL SLEVALKFFG LQDALGFDKP SKTVEWLLIQ SEPAIKKLSR DHHRQFNYKH  240
MVRCAKTTSP ATSESCEVLS GVDEAPTNVN ISSNGKVRSR GIKPSAKERK IVHRQSRKSA  300
FHPLAKASRE NARARARERT REKMQRSKKP SNDQANSSRL SSWNPFETEE ESPIHNNNMT  360
STTNDQPNSR AVLRDYPDEV EEPLSSSQAG DIQDMVVDHG TTHDAMVVLG KWSPPPVFTR  420
LQQNTGISQE HQQFADFQFF GKPWEVDNNT HNQSILSGNF LS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5010650.0KM501065.1 Malus domestica TCP domain-containing protein 18 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346767.10.0PREDICTED: transcription factor TCP12
RefseqXP_009346776.10.0PREDICTED: transcription factor TCP12
TrEMBLA0A498JRK60.0A0A498JRK6_MALDO; Uncharacterized protein
STRINGXP_009346767.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.14e-24TCP family protein