PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr020171.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 378aa    MW: 42022.4 Da    PI: 8.5107
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr020171.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP91.22.2e-28611833101
          TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....................ssssa.....sec. 73 
                  g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl   ++ i++l+ +                     +   +         
  Pbr020171.1  61 GGKDRHSKVSTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLDITEQDIDKLPPLqvphgfghqfhqpmlnphkasN---SlvapfF-Dv 154
                  78*************************************************************7777666666665555432220...1222221.02 PP

          TCP  74 .eaesssssasnsssgkaaksaakskksq 101
                   ++ ++  ++++++ +++ak +  + ++ 
  Pbr020171.1 155 nSTFMEADQVDHQEVHDQAKGKSIRTNDG 183
                  22233333333333333333333222222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.4E-2762185IPR005333Transcription factor, TCP
PROSITE profilePS5136927.3562120IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MITNSRDKGF QAKQEGHNNN NNNDGNNNSN FHKASSSSTT TSRQWSGFRN PRIVRVSRTF  60
GGKDRHSKVS TVRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVIDWLL DITEQDIDKL  120
PPLQVPHGFG HQFHQPMLNP HKASNSLVAP FFDVNSTFME ADQVDHQEVH DQAKGKSIRT  180
NDGQDDQNRH DHEGNVSGQL LAQKLFPIGN HPSSIPGLLN NAMAYNYYHN YSEPSTLSLA  240
QFGSHEFPQV PQIDQHHSHM MSTNALSFST PLPSVSQLFF CPPTATPTLF GSYPPYITNP  300
IVEGTSTATD QPRQANHFQF LSSPSNSQNF LANNALMPPL HSVSSSLKSF PSLVHPKQQL  360
HLNSQNNNGS QPNKDVP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1967121155Putative transcription factor PCF6
5zkt_B3e-1967121155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr020171.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346052.10.0PREDICTED: transcription factor TCP5-like
TrEMBLA0A498JRI10.0A0A498JRI1_MALDO; Uncharacterized protein
STRINGXP_009346052.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.19e-48TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5