PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr019653.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 383aa    MW: 43050.3 Da    PI: 7.6331
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr019653.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.38.1e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
   Pbr019653.1  25 FLTKTYQLVDDPTTDHIVSWGDDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   Pbr019653.1 113 RRKTA 117
                   **986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.7E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.7E-6021114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.59E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.5E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MALMIDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPTTDH IVSWGDDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTAQPH  120
QVGLSHHHHH SQLGMNGHHH HPGFFPFPSP GSISPSDSDE QPNWCDSDSP PLLSPTGGIN  180
TNINSNNNNF MNINNNNTTV AGLAEDNERL RRSNTMLMSE LAHMRKLYND IIYFVQNHVK  240
PVAPSNSYPS SMLLCNPQPP KHNGPNGNLN QLLGYYPAAP PPNAKQNPHH IMNSSSPMSN  300
TTSKSSSVTI LEDHHQQPPS GNNGCKNTKL FGVPLLHSKK RLHPEEYGSN NHHGNNMMEA  360
SKARLILEKD DLGLHLMPPS RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-212111626131Heat shock factor protein 1
5d5v_B2e-212111626131Heat shock factor protein 1
5d5v_D2e-212111626131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr019653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3768812e-75AK376881.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3143C10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009359791.10.0PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-119HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLD9ZJ320.0D9ZJ32_MALDO; HSF domain class transcription factor
STRINGXP_009359791.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-101heat shock transcription factor B4