PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018847.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 347aa    MW: 40243 Da    PI: 4.7723
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018847.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.24.7e-37241162103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y+i++d+++++++sws+++nsfvvld+++f+ ++Lp+yFkh+nf+SFvRQLn+YgF+kv++++         weF+++ F +g+k+ll++i+
   Pbr018847.1  24 FLAKTYDIVDDPSTNHIVSWSRDNNSFVVLDPNSFSMSLLPRYFKHNNFSSFVRQLNTYGFRKVDTDR---------WEFANEAFLRGQKHLLKNIR 111
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k +
   Pbr018847.1 112 RRKAS 116
                   **976 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.6E-4019113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.81E-3620113IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6020113IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-202447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-206274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.5E-207587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MNLDQDPDHP LPLERLYDQG PPPFLAKTYD IVDDPSTNHI VSWSRDNNSF VVLDPNSFSM  60
SLLPRYFKHN NFSSFVRQLN TYGFRKVDTD RWEFANEAFL RGQKHLLKNI RRRKASHLPQ  120
ASQKTLDSCV EVGRFGLDIE IDQLRRDKQV LMGELVKLRQ QQQANRVYLQ GMEDRLKRTE  180
LKQQHMLSFL ARAMQNPNFV QQLSQQKDLR KELEKAVTKK RRRTIEQGPS NVEVDELDHV  240
GIETYVKVEP QEYGDISDQF EVSELDQFAI DMPGVSGSQN VHGDQECIER DEEHEGRGKD  300
LDKGYWQDLF NENIDEEIGL LGVQEEDQED VNVLIEELGF LAPSPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-262211618123Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009376015.10.0PREDICTED: heat stress transcription factor A-6b-like
SwissprotQ9LUH81e-123HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLM5XVS40.0M5XVS4_PRUPE; Uncharacterized protein
STRINGPOPTR_0010s09210.11e-152(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-124heat shock transcription factor A6B