PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018420.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 251aa    MW: 26934.4 Da    PI: 10.3523
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018420.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP66.59.2e-21169627113
          TCP  27 ecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaakskksqksaasalnlake 113
                  ++  r+ +Lq++LG+++d++tieWLlqqa+p+++++tgt++++a+++ ++ s +ss+s+        sa +sk++++s + al+la++
  Pbr018420.1  16 QTGLRLWELQRKLGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFStSNISLRSSGSS-------LSASPSKSAPHSFHGALALAHH 96 
                  5667899*************************************999666666666552.......2222444444444444555544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136913.235151IPR017887Transcription factor TCP subgroup
PfamPF036346.7E-211688IPR005333Transcription factor, TCP
PfamPF017781.2E-18180245IPR029004Ribosomal L28e/Mak16
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MAPLLLFRWG ERALLQTGLR LWELQRKLGH KSDGETIEWL LQQAEPSVIA ATGTGTIPAN  60
FSTSNISLRS SGSSLSASPS KSAPHSFHGA LALAHHPHYD EGFAHSGLMG FHQSPSPPPV  120
TISTASQFTL PHNSLHFCSA HPPYHSTHPS PLDKPTEPPS LSPSANQRNP GAMTTVPGQL  180
IWKIVKKNNS FLVKEFGRGN AGVRFSKEPN NLYNLHSYKH SGLANKKTVS IQAGGKDQSV  240
VLATTATRSC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4v7e_Cr6e-3217324817760S ribosomal protein L28E
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr018420.1
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.13e-20TCP family protein