PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr018291.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family GRAS
Protein Properties Length: 550aa    MW: 61308.2 Da    PI: 6.109
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr018291.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS260.36.8e-801605412374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal...ppsetseknsseelaalklfsevsPilkfshl 96 
                  ++lL  cA a++ g+ +++q+lL  l+elas +gd+++Rlaa+ + AL+++l++s+s+  +     +p + ++++     ++l  f+evsP++ f + 
  Pbr018291.1 160 EQLLNPCASAITGGNSTRVQHLLFVLHELASVTGDANHRLAAHGLHALNQHLSSSSSSAPNGSasaAPVTFTSTEPRFFQKSLMKFYEVSPWFAFPNN 257
                  689**************************************************96666544431014444444444444444445************* PP

         GRAS  97 taNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvl 181
                  +aN+ Il+ +++e    +++Hi+D ++s+G+QWp+Ll+aL+ Rp ++pp ++iT+++ +e++              +  + L +fA+ ++++++++ l
  Pbr018291.1 258 IANSSILQLIAEEfdrtRTLHIVDVGVSHGMQWPTLLEALTHRPgGPPPLVKITVIAGAENNqnrgtpfaVGPPGDNFSNGLLSFAKYMNINLQIKRL 355
                  ****9998888777776999************************55566*******9888777778777767778899999****************9 PP

         GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh...nsesFlerflealeyysalfdsleaklp 276
                    + l++l+ + ++ +++E+l+V+++++lh+l    +++++er+e+Lk ++s++Pk v+++e+++++   n ++F+++f++ +ey + ++ds+++ + 
  Pbr018291.1 356 DDQPLKTLNAQLIDASNDETLIVCVQFRLHQLN---HNTPDERTEFLKSLRSMEPKGVILSENNMECscnNCGDFATGFSRQVEYLWRFLDSTSVAF- 449
                  999*****************************8...77777889*******************9665446778********************9996. PP

         GRAS 277 reseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373
                     + r + Er++++ e+ ++++++g++    +e +ekW er++++GF    ++e+a +  ++llrk++ +++++v+e++g++ l Wk++p+ ++S W
  Pbr018291.1 450 ---KGRESEERRVMEGEAAKALTNRGEM----NEGKEKWGERMRRVGFVGEVFGEDAIDGGRALLRKYDsNWEMKVDEKDGCVGLWWKGQPVSFCSLW 540
                  ...77888888888888999**999999....9************************************9999************************* PP

         GRAS 374 r 374
                  +
  Pbr018291.1 541 K 541
                  8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.231133520IPR005202Transcription factor GRAS
PfamPF035142.4E-77160541IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MTTEQPEPNS TSDHILDWLE DSVTFFPSFW DDPYHSNDID GGLQWWDENH DLVHPTTNPT  60
CLNNPTGISI PTTTTGPPNP ANLNHPSPTD SSKKRKASPE EQQIDRKNHH GXXXXXXXXX  120
XXXXXXXXXX XXXXXXTAVR SILPSRGTNQ VKSKEGRWAE QLLNPCASAI TGGNSTRVQH  180
LLFVLHELAS VTGDANHRLA AHGLHALNQH LSSSSSSAPN GSASAAPVTF TSTEPRFFQK  240
SLMKFYEVSP WFAFPNNIAN SSILQLIAEE FDRTRTLHIV DVGVSHGMQW PTLLEALTHR  300
PGGPPPLVKI TVIAGAENNQ NRGTPFAVGP PGDNFSNGLL SFAKYMNINL QIKRLDDQPL  360
KTLNAQLIDA SNDETLIVCV QFRLHQLNHN TPDERTEFLK SLRSMEPKGV ILSENNMECS  420
CNNCGDFATG FSRQVEYLWR FLDSTSVAFK GRESEERRVM EGEAAKALTN RGEMNEGKEK  480
WGERMRRVGF VGEVFGEDAI DGGRALLRKY DSNWEMKVDE KDGCVGLWWK GQPVSFCSLW  540
KPHESEGNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2118754125375GRAS family transcription factor containing p
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009375460.10.0PREDICTED: nodulation-signaling pathway 1 protein
SwissprotQ4VYC80.0NSP1_MEDTR; Nodulation-signaling pathway 1 protein
TrEMBLD9ZJB40.0D9ZJB4_MALDO; SCL domain class transcription factor
STRINGVIT_09s0002g01190.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68743447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-160GRAS family protein