PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016948.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 346aa    MW: 38770.4 Da    PI: 9.2483
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016948.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34131042102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k+y++++d+++++li+w + +nsf+v+d+  f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll+++ 
   Pbr016948.1  13 FVLKTYQMVNDPTTDNLITWGRANNSFIVVDPLVFSQRLLPAYFKHNNFSSFVRQLNTYGFRKVDPDK---------WEFANEWFLRGQTHLLRNVA 100
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Pbr016948.1 101 RRKQ 104
                   *997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.5E-36596IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.2E-529102IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467859.66E-3310102IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.8E-2913102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-181336IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-185163IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405276IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-186476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MMMEESNNVI APFVLKTYQM VNDPTTDNLI TWGRANNSFI VVDPLVFSQR LLPAYFKHNN  60
FSSFVRQLNT YGFRKVDPDK WEFANEWFLR GQTHLLRNVA RRKQMGKSSN SNSLFSNSNS  120
NFLPTKHEEL NDEDIIMEIS RLKQEQKALE EEIGNMNRRL ETTERRPQQM MAFLHKVAED  180
PEILPRMMLE KDRATTALLG EKKRRGVTRM MLEKDRATTA LLGEKKRRVM MIASTSSSSS  240
GMGATTSVRT EDEDDGTVGV ISSSPEAGFE MESFNRYSTS PEVQTASDWL RQRRFVDQVR  300
AVQNPNNMNP TASGHGAENI RNSSSSGYGY GNGNGNGGGP GGGGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A2e-24101027110Heat shock factor protein 1
5hdn_A2e-24101027110Heat shock factor protein 1
5hdn_B2e-24101027110Heat shock factor protein 1
5hdn_C2e-24101027110Heat shock factor protein 1
5hdn_D2e-24101027110Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016948.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506836.10.0PREDICTED: heat stress transcription factor C-1 isoform X1
SwissprotQ9LV527e-86HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLA0A498HV720.0A0A498HV72_MALDO; Uncharacterized protein
STRINGXP_009374015.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83673038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.14e-86heat shock transcription factor C1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]