PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016487.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 484aa    MW: 53684.3 Da    PI: 5.0845
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016487.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.61.1e-34161062101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++e++sws+n++sfvv+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +++k+ll++i+
   Pbr016487.1  16 FLLKTYNMVDDSATDEIVSWSSNKKSFVVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKSDPER---------WEFANEDFIQDQKHLLKNIH 103
                   9**************************************************************99988.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Pbr016487.1 104 RRK 106
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.6E-5912105IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.9E-3712105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.16E-3412105IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.7E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-181639IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-185466IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.1E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEGGSTAGGG GGPAPFLLKT YNMVDDSATD EIVSWSSNKK SFVVWNPPEF ARVLLPTYFK  60
HNNFSSFIRQ LNTYGFRKSD PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
PERAALDDEI EKLSNDKAAL EASISTFKQQ RSAAKLQLEN LAQRVSGMEQ RQKNLLTFLD  180
EAVHNPNFIE HLSRKFESMD FSAYNKKRRL PDIENLQPVV ENGFVDNQSS SISEFGNVFH  240
QDFSSKLRLE LSPAVSDMNL VSLSTQSSNE DGGSSTRKIS EELKGAQMRT EGLLFAPETL  300
ELSDTGTSFA FKMDSLLSRK APTVGSPIRH SLQPGLPSNE EGDGNISCQL NLTLASTPSQ  360
VNNSPYSAAV PQVGQDINKS AASELNDKGK EPDLRAFTNK NLADDDKPKT SSQEATHNNQ  420
APALVPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRFGHG MSRTVKDAET  480
LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-20910519129Heat shock factor protein 1
5d5v_B3e-20910519129Heat shock factor protein 1
5d5v_D3e-20910519129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016487.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1321930.0KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009373551.10.0PREDICTED: heat stress transcription factor A-5
RefseqXP_009373553.10.0PREDICTED: heat stress transcription factor A-5
SwissprotQ94BZ51e-161HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A172C4J70.0A0A172C4J7_9ROSA; Heat shock factor 2
STRINGXP_009373551.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-163HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]