PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr016090.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 424aa    MW: 47757.2 Da    PI: 5.6575
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr016090.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34141052102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+ye+++d+++++++sws++++sf+v+++ efa+++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ + +++i+
   Pbr016090.1  14 FLSKTYEMVDDASTDSIVSWSASNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFIRGQPHIMKNIR 101
                   9********************999****************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Pbr016090.1 102 RRKP 105
                   *985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.54E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.3E-6210103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.1E-3711103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.3E-3014103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEEVQGGTSS LPPFLSKTYE MVDDASTDSI VSWSASNKSF IVWNPPEFAR DLLPKFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFI RGQPHIMKNI RRRKPVHSHS LQNLQVQGQG  120
TSLSEAERQS MKVEIERLKH EKERLGVEVQ RHEQERHGLE LQMQFLMDRL QDMEKQQQTM  180
AAFVARVLQK PGIASNPVPQ LEVRERKRRL PRISWSFDDA NSGYNQMVSS QAVIRESGSM  240
EKLEQLESFL TFWEDTIHDV SHNNIQVGSN READESTSGN ESTALSSIQL NADIRSKSPG  300
IDMNAEPPAS VAPKPAASQS SKEQTAGIAA SAPTTALIQQ TSKEKTDGTT ASAATGVNDV  360
FWEQFLTENP GTSEAQEVLI ERKDSDGKKN DSRPGDHGML WWNMRNVNNL TEQMGHLTPV  420
EKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-25610312120Heat shock factor protein 1
5d5u_B2e-25710322129Heat shock factor protein 1
5d5v_B2e-25710322129Heat shock factor protein 1
5d5v_D2e-25710322129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204209ERKRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr016090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1321920.0KR132192.1 Eriobotrya japonica heat shock factor 1 (HSF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352719.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494031e-123HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A498ISU30.0A0A498ISU3_MALDO; Uncharacterized protein
STRINGXP_009352719.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-123heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]