PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015728.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family C2H2
Protein Properties Length: 321aa    MW: 36139.9 Da    PI: 5.8838
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015728.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.30.00025727323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++C+k+Fs+   +  H+r+H
  Pbr015728.1  7 CKICNKRFSNGKAMGGHMRSH 27
                 *******************99 PP

2zf-C2H214.20.00013184206123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ykC+ C+k+F++   L  H  +H
  Pbr015728.1 184 YKCETCDKVFRSYQALGGHRASH 206
                  9***********99999998887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.04E-5232No hitNo description
SMARTSM003550.078527IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.138532IPR007087Zinc finger, C2H2
PfamPF139127.7E-9629IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
PfamPF139121.1E-11184208IPR007087Zinc finger, C2H2
SuperFamilySSF576673.63E-8184206No hitNo description
SMARTSM003550.012184206IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93184206IPR007087Zinc finger, C2H2
PROSITE patternPS000280186206IPR007087Zinc finger, C2H2
SuperFamilySSF576673.63E-8240267No hitNo description
PfamPF139125.6E-9245267IPR007087Zinc finger, C2H2
PROSITE profilePS501579.806245267IPR007087Zinc finger, C2H2
SMARTSM003550.62245267IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280247267IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEKQRICKIC NKRFSNGKAM GGHMRSHLAK LPLPPKPQSP PQQQHHQLSD SPESSSPPFS  60
TSNRGMHSSL DSAVVHDGGD SDSESHPRNP THRRSKRRRK VIGKSSLTLP FEAEQVSSVT  120
DAFSTEDVAR CLIMLSMDKW DKWEKVKVKN GVDESADEEE EDESDDRGGS GLRSHTRVRT  180
RGKYKCETCD KVFRSYQALG GHRASHKKIL KTQVFDDYEE EEDEDFEEDD GQNGNLAVVE  240
NHRIFECSVC FKQFDSGQAL GGHKKVHYYN NLTINAPTRN MNLPASSTNF VDNLVIDLNL  300
PAPEEEEEEI SQVEFSTVFD *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015728.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372862.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A498JLV71e-156A0A498JLV7_MALDO; Uncharacterized protein
STRINGXP_009372862.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76734122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.11e-34C2H2-like zinc finger protein