PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr015073.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family WRKY
Protein Properties Length: 326aa    MW: 36437.8 Da    PI: 10.4408
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr015073.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.59e-31264321359
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                  D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYegeH+h+
  Pbr015073.1 264 DEFSWRKYGQKPIKGSPYPRGYYKCSSIrGCPARKHVERCLEDPAMLIVTYEGEHKHS 321
                  99***********************9988****************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.4E-12216260IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.804.1E-33250322IPR003657WRKY domain
PROSITE profilePS5081129.31257323IPR003657WRKY domain
SuperFamilySSF1182901.7E-26258322IPR003657WRKY domain
SMARTSM007748.0E-37262322IPR003657WRKY domain
PfamPF031066.2E-26264320IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MEEVEAANRA AVGSCHRVLN LLCKPKPWKN LQVETEVAVF KFKRVLSLLS HGRGRVRKLK  60
KNLNPPPFPQ NIFSDGPNYS DISPKPLQLL PPTFPKTPHA EKKFLGNPVL DANLKLPLQI  120
PKTKTLKQHQ EEREKLQFHP QQVKYQSEMV FSGIDSGINL AFDRSSSSFN PSMTSARSFM  180
SCLSIGDGGE VNTGRDSFRL INGVPRVSGQ SSQQQSRCTG VVENGSVNCG SSGKCQYPKK  240
RKLRVKRTFK VPAISDKTSD IPPDEFSWRK YGQKPIKGSP YPRGYYKCSS IRGCPARKHV  300
ERCLEDPAML IVTYEGEHKH SQSAR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-202603201271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr015073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372169.10.0PREDICTED: probable WRKY transcription factor 74
SwissprotQ93WU61e-88WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A498K3L10.0A0A498K3L1_MALDO; Uncharacterized protein
STRINGXP_009372169.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26373479
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04670.13e-87WRKY DNA-binding protein 39
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]