PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr014831.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 328aa    MW: 36334.4 Da    PI: 4.865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr014831.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.11.1e-1855103355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + GVr+++ +gr++AeIrdp++   + r++lg+f+taeeAa a+++a+++++g
  Pbr014831.1  55 FLGVRRRP-WGRYAAEIRDPNT---KERHWLGTFDTAEEAALAYDRAALSMKG 103
                  56******.**********933...5************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103220.95654111IPR001471AP2/ERF domain
SMARTSM003809.1E-3454117IPR001471AP2/ERF domain
CDDcd000181.46E-2954110No hitNo description
SuperFamilySSF541711.05E-2055112IPR016177DNA-binding domain
PRINTSPR003674.6E-85566IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-2955111IPR001471AP2/ERF domain
PfamPF008472.6E-1257103IPR001471AP2/ERF domain
PRINTSPR003674.6E-87793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSMSTSQALE KPFEAFEQGQ AQVGIAAVLQ RSTLTPSSQS GERRGRRKQA EPGRFLGVRR  60
RPWGRYAAEI RDPNTKERHW LGTFDTAEEA ALAYDRAALS MKGSQARTNF IYSDNTTFHS  120
LLSPFDVQTL LPQQSQFFTT QTAKQQLTNQ DSPPHHSNTF QSDQTQFQNP NNIRSSSSAH  180
HEDDECFFFS GNSSNSNSGY LACIVPDSCL RPPSDNDDPQ NYTNSKALNI DQNCSFANPN  240
NSTSATLPLD IMNVQADLET PNNNNNGDHQ ISCSDGFSHG FWDNQQPWEF NPMMTEDGCM  300
GALYPIVENS SAYGSSSSFS CFGHSLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-2045110571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr014831.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009352329.10.0PREDICTED: ethylene-responsive transcription factor ERF086
SwissprotQ6J9Q25e-58ERF86_ARATH; Ethylene-responsive transcription factor ERF086
TrEMBLA0A498HSB30.0A0A498HSB3_MALDO; Uncharacterized protein
STRINGXP_009352329.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57843351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.12e-42ERF family protein
Publications ? help Back to Top
  1. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  2. Chandler JW,Werr W
    DORNRĂ–SCHEN, DORNRĂ–SCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  3. Chandler JW
    Class VIIIb APETALA2 Ethylene Response Factors in Plant Development.
    Trends Plant Sci., 2018. 23(2): p. 151-162
    [PMID:29074232]