PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013953.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 318aa    MW: 35505.9 Da    PI: 5.8778
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013953.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-35461362101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++++isw+++g+sfvv++++ fa+++LpkyFkh+nf+SFvRQLn+YgF+kv  ++         weF ++sF++g k+ll++i+
   Pbr013953.1  46 FLTKTYQLVDDPSIDDVISWNDDGSSFVVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFLNDSFRRGGKRLLCEIQ 133
                   9*****************************************************************99.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Pbr013953.1 134 RRK 136
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5742135IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.26E-3543135IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.7E-3743135IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004475.5E-3246135IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-214669IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-218496IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434085109IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.0E-2197109IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MAPTPLEPTG ESTSGESSQR XXXXXXXXXX XXPSGDLSQR ALPTPFLTKT YQLVDDPSID  60
DVISWNDDGS SFVVWNPTVF ARDLLPKYFK HNNFSSFVRQ LNTYGFRKVV PDRWEFLNDS  120
FRRGGKRLLC EIQRRKINPP APPVASVWAV PTAKPMISPS NSGDEQVMSS SSSPIRASSE  180
IMDENERLRK ENVQLTKELA EVKSLCNNIF TMVSNYACAQ SENGFPELKP LDLMPGKRFS  240
GKRKNEEEEE ASPKLFGVVI GAKRAREAGG DGVENDETDL RLQQPSGSEV KSEPSDIGHK  300
ETPWLKQCHM ANQRVCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-234613529129Heat shock factor protein 1
5d5v_B2e-234613529129Heat shock factor protein 1
5d5v_D2e-234613529129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013953.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018506236.10.0PREDICTED: heat stress transcription factor B-2a
SwissprotQ9SCW44e-93HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLA0A498JN670.0A0A498JN67_MALDO; Uncharacterized protein
STRINGXP_009371307.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.14e-92heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]