PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013717.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family TCP
Protein Properties Length: 377aa    MW: 42168.1 Da    PI: 9.0309
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013717.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP125.65.2e-391242632130
          TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssasnsss 87 
                  ++kkd+hski T++g+RdRRvRls+++ ++fFdLqd+LGfd++skt+eWLl+++ +ai +l               s ss sec              
  Pbr013717.1 124 PAKKDQHSKIFTAQGLRDRRVRLSIDVSRQFFDLQDRLGFDTASKTLEWLLNKSRKAIRDLRTRknnlscsserskSLSSTSEC-------------- 207
                  78***********************************************************99956555544433322233444.............. PP

          TCP  88 g..............kaaksaakskksqksaasalnlakesrakarararertrekm 130
                  +              +++k+    k +++++a    +akesraka+ararer r k+
  Pbr013717.1 208 KdvvsdinevdnhvvSKEKEMVMMKLKESESA-GAYVAKESRAKAKARARERARAKK 263
                  12333333444455444444444444444444.68999*************766553 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014473.66E-52938No hitNo description
PfamPF036342.1E-37125263IPR005333Transcription factor, TCP
PROSITE profilePS5136932.127126184IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.344245262IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MFSSSSCNSN TVSPQPNFPF SSTNYHPHPP PPPPPPPPCV NLVTCTGDIL FHHIHDSLSG  60
QFSHQNISLM APSAHQTLTH LGVSSNTVPP SINAPVSSSC GDLHHHQYSN YVLHSSRQDV  120
VVAPAKKDQH SKIFTAQGLR DRRVRLSIDV SRQFFDLQDR LGFDTASKTL EWLLNKSRKA  180
IRDLRTRKNN LSCSSERSKS LSSTSECKDV VSDINEVDNH VVSKEKEMVM MKLKESESAG  240
AYVAKESRAK AKARARERAR AKKVCITSRR PQQILNQMNL FNEQLNDHET NISSSSKVNF  300
GDHHVNQELG SLLDNQAHHH HFQEEDQSAL IKRNKMKLIS SVVSNYNTTD QSSSNSYLQF  360
TNSSQYWDIN GAFPMP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A5e-15131184154Putative transcription factor PCF6
5zkt_B5e-15131184154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013717.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009349286.20.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A498HB270.0A0A498HB27_MALDO; Uncharacterized protein
STRINGXP_009349286.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17383294
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.29e-27TCP family protein