PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013296.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 232aa    MW: 24852.1 Da    PI: 7.3116
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013296.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260896e-284107199
       DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                  +C++C+vlr++C+++C ++p++      ++q++++ +++k++G++ +l+l++a ++  r+++++sl+yeA+ r+ +P yG+vg+++++ ++ +q++++
  Pbr013296.1   4 SCNGCRVLRKGCSDECEIRPCIewiksSESQANATLFLAKFYGRAGLLNLINAGSPALRPAIFKSLLYEACGRIVNPTYGSVGLMWSGGWDQCQAAVD 101
                  6*********************9999778899****************************************************************99 PP

       DUF260  94 lallke 99 
                  ++l ++
  Pbr013296.1 102 AVLEGS 107
                  987665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.4913109IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-224101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDECE IRPCIEWIKS SESQANATLF LAKFYGRAGL LNLINAGSPA  60
LRPAIFKSLL YEACGRIVNP TYGSVGLMWS GGWDQCQAAV DAVLEGSPIM GIDADVLKRN  120
TNPNLDPPHK SGDIRHVSRD TTSGSSSHNK ATTRNKLKRS MNRPKIQPDF ATGSNTKSLA  180
QLCNVPDPDD LYPIPQGNGS SGDQQAADDQ DGEIGLELTL GLGLPPLTHL N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr013296.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009356758.11e-172PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9CA302e-69LBD42_ARATH; LOB domain-containing protein 42
TrEMBLA0A498HJT51e-150A0A498HJT5_MALDO; Uncharacterized protein
STRINGXP_009356758.11e-171(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68510.11e-71LOB domain-containing protein 42