PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr013062.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family LBD
Protein Properties Length: 177aa    MW: 19721.3 Da    PI: 7.2898
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr013062.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.26.7e-4471061100
       DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 
                  +Ca+C++lrr+Cak+C++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+++l+ +la+++
  Pbr013062.1   7 PCASCRLLRRRCAKGCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRGDAVSSLVYEANARMRDPVYGCVGAISFLQNQVSELQMQLAVAQ 104
                  7**********************************************************************************************998 PP

       DUF260  99 ee 100
                  +e
  Pbr013062.1 105 AE 106
                  76 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.1436107IPR004883Lateral organ boundaries, LOB
PfamPF031953.9E-437104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGSGSSPCAS CRLLRRRCAK GCIFAPYFPS DDPHKFAIVH KVFGASNVSK MLQELPIHQR  60
GDAVSSLVYE ANARMRDPVY GCVGAISFLQ NQVSELQMQL AVAQAETLCF QMQQDPVALP  120
TQIDQHQHHH QHQDHDQKSL LLSNSDFNSI PHQYFSSFAS PSNVIQDPLK RESLWT*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009354277.11e-130PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW33e-80LBD12_ARATH; LOB domain-containing protein 12
TrEMBLM5W0D71e-102M5W0D7_PRUPE; Uncharacterized protein
STRINGVIT_06s0004g07200.t019e-95(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16643497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.17e-69LBD family protein