PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012908.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 357aa    MW: 40481.9 Da    PI: 5.0041
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012908.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.46.1e-35471382102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+  + ++sws+ g sfvv+d+++f  ++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++ik
   Pbr012908.1  47 FLNKTYDMVDDSGSNGVVSWSRGGASFVVWDPHTFVMSLLPKYFKHNNFSSFVRQLNTYGFRKVDPNR---------WEFANEGFVRGQKHLLKNIK 134
                   9***************************************************************9998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
   Pbr012908.1 135 RRKA 138
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.4E-3743136IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.05E-3443136IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.2E-5943136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-194770IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3147136IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-198597IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434086110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.8E-1998110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MNYLYPVKEE YPGSSSSQPG PGFDQMVMTI PPPQPMEGLN DMGPPPFLNK TYDMVDDSGS  60
NGVVSWSRGG ASFVVWDPHT FVMSLLPKYF KHNNFSSFVR QLNTYGFRKV DPNRWEFANE  120
GFVRGQKHLL KNIKRRKAPS QPFPAQQAVG PCMELGHFGI DGEVDRLRHD KQVLMMELVK  180
LRQQQQSTRA YLQAMEQRLQ GTELKQQQMM SFLARAMQNP AFIQQLVQQK EKKKELEEAM  240
TKKRRRPIDQ GLSGVGGGES NQVKREPPEF GDCEYEMSEL EALAMEMQGL GKVGKEQKEV  300
VEPLDSGDKE LDEGFWEELL SERFEGDSTI PSADVGEDED VIILADRLGY FGSWPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A5e-234513618120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129135LKNIKRR
2231245KKKELEEAMTKKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6272372e-75AB627237.1 Malus x domestica mRNA, microsatellite: MEST080, clone: FRT01_22_F12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009370758.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_009370759.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_009370761.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_009370762.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_009370763.10.0PREDICTED: heat stress transcription factor A-6b
RefseqXP_009370764.10.0PREDICTED: heat stress transcription factor A-6b
SwissprotQ6VBB21e-125HFA2B_ORYSJ; Heat stress transcription factor A-2b
TrEMBLA0A061DRG41e-178A0A061DRG4_THECC; DNA binding protein, putative isoform 1
STRINGVIT_00s0179g00150.t011e-161(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-106heat shock transcription factor A6B