PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr012136.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 415aa    MW: 46825.7 Da    PI: 4.5896
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr012136.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.35.7e-34221132102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k ye+++d++ +++iswse g+sf++ld+ +f+ ++LpkyFkhsnf+SF+RQLn+YgF+k++ ++         w F+++ F +g+k+ll++i 
   Pbr012136.1  22 FLRKCYEMVDDKDSDSIISWSEAGDSFAILDMAQFSISMLPKYFKHSNFSSFMRQLNIYGFRKIDPDR---------WVFANEGFIRGQKHLLKNIA 109
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Pbr012136.1 110 RRKH 113
                   *986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-5118111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.8E-3518111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467859.52E-3318111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.0E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.5E-2922111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.0E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MVKSAEKGGG DGSGPSGSVP PFLRKCYEMV DDKDSDSIIS WSEAGDSFAI LDMAQFSISM  60
LPKYFKHSNF SSFMRQLNIY GFRKIDPDRW VFANEGFIRG QKHLLKNIAR RKHPQGADQK  120
KILQQKDNPD IPSENISENG LWKEVENLKT DKVALKQELA KLRQHQEISQ NKLLLLRNRL  180
RGMEKNQQQM LSFLVMAMQS PGFLVQLLHP KENSWRIAEP GDIIEQCMDD DRPVASDGAI  240
VRYQPPMIEA PKPLVPPNSG SGKQPEVDAY LGGMEDFVVN PDFMKMLMDE KSSPVETHAP  300
YTLPDISDDG AWEQFLLASP FLENIEGTKE DGEEPADARM EVEPMVSDLD ESQKFDYFVE  360
QMKKSQNFAS ESTVDGSNME SSQNLEFITE QMGHLASDSN NMEQNQESRR TTSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26911117129Heat shock factor protein 1
5d5v_B2e-26911117129Heat shock factor protein 1
5d5v_D2e-26911117129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr012136.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009351567.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLD9ZJ250.0D9ZJ25_MALDO; HSF domain class transcription factor
STRINGXP_009351567.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.19e-91heat shock transcription factor A8