PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr011103.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 154aa    MW: 17399 Da    PI: 6.9611
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr011103.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.82.6e-182374256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+G+r ++ +g+++AeIrdps ng   r +lg+f taeeAa+a+++a+  ++g+
  Pbr011103.1 23 RYRGIRKRP-WGKFAAEIRDPSRNG--VRLWLGTFETAEEAARAYDRAAFGFRGH 74
                 7********.**********98887..**********************988886 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-222382IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.2E-312382IPR001471AP2/ERF domain
SMARTSM003801.2E-352388IPR001471AP2/ERF domain
PfamPF008474.8E-122374IPR001471AP2/ERF domain
PROSITE profilePS5103224.5792381IPR001471AP2/ERF domain
CDDcd000183.75E-292383No hitNo description
PRINTSPR003672.3E-112435IPR001471AP2/ERF domain
PRINTSPR003672.3E-114763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MEGKRGPENN NQQKEPKARD QNRYRGIRKR PWGKFAAEIR DPSRNGVRLW LGTFETAEEA  60
ARAYDRAAFG FRGHLAILNF PNDYQYHNPS SSLSTLCSSS SSASSSSFSS VDPGRSINFG  120
RGQEEDKVIE FEYLDNNVLE ELLDTKEDHH RQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-282013811114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr011103.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF9687650.0HF968765.1 Malus x domestica metacontig of the Co-Gene region, cultivar Procats28, columnar allele.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369515.11e-111PREDICTED: ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC52e-44ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A498JSV02e-76A0A498JSV0_MALDO; Uncharacterized protein
STRINGXP_009369515.11e-110(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.12e-33ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]