PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010949.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family ERF
Protein Properties Length: 416aa    MW: 45585.4 Da    PI: 4.7277
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010949.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-1879129155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr++  +g+WvAeIr+p     r  r +lg+f ta eAa a+++a+++++g
  Pbr010949.1  79 CNYRGVRQRT-WGKWVAEIREPD----RgSRLWLGTFPTAVEAALAYDEAARAMYG 129
                  56*****999.**********82....34***********************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-1279129IPR001471AP2/ERF domain
CDDcd000187.87E-3179138No hitNo description
SuperFamilySSF541716.54E-2080138IPR016177DNA-binding domain
SMARTSM003801.4E-3680143IPR001471AP2/ERF domain
PROSITE profilePS5103221.33880137IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-3080138IPR001471AP2/ERF domain
PRINTSPR003671.2E-98192IPR001471AP2/ERF domain
PRINTSPR003671.2E-9103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MGAYDQGVNM PYLPLDSSRK RKTRSRRDGN SVADTLEKWK EYNKQLESAK EEGKKRKVPA  60
KGSKKGCMKG KGGPENARCN YRGVRQRTWG KWVAEIREPD RGSRLWLGTF PTAVEAALAY  120
DEAARAMYGD GARLNLPHGV NNHPSSSQET SSVATPSGSS AAATPGCSTS TSTSSHSEVC  180
GDENSKLFLN VKKEDGEGES RMYPWSGAVP QASGMVKSEV SEDLDVDYLR HNQQQPVVVK  240
PERGVEDHNP NGGDGFVGDC SENFTMCELF DMDEMFDANE LLMPSDDTSF CNSGPEQVSR  300
PDVGQPGMEI LSSEGPSNLS YQLQFPDAKL LGSLPHMEQA PLDYEYDFDF MKQEEGSNHT  360
SQNDQGYFNL GPSDLGLGGL TEVELVNAMK GSFDIAFRNI RMFNDVVNAN AFMKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1780137260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-1780142568ATERF1
3gcc_A4e-1780142568ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722SRKRKT
22027RKTRSRRD
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr010949.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0011750.0KP001175.1 Pyrus hybrid cultivar dehydration responsive element binding protein (DREB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009369224.10.0PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLA0A0B5J8030.0A0A0B5J803_9ROSA; Dehydration responsive element binding protein
STRINGXP_009369224.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117534106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05410.22e-36DRE-binding protein 2A