PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr010581.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family bHLH
Protein Properties Length: 547aa    MW: 59058 Da    PI: 5.6762
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr010581.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.39.9e-12361403754
                  HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
          HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                  ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  Pbr010581.1 361 MAERRRRQKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 403
                  79*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.701354403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-16357423IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-9360403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-13360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.72E-13361407No hitNo description
Gene3DG3DSA:4.10.280.109.9E-16361416IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048732.62E-7475535No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MLPRLNGGVW MDDREDRETV SWTRTSAAAI ASTTENKDEM GSLSTFKSML EAEDDWYMAT  60
NNSIHGHSDV RDISFSPSFA DPESLLLNPV DSSSSCSPSS SVFNNLDPNQ VHYYMPQNPN  120
LSSLLNVVPN NPLDHGFDLG CDIGFLDTQA STGGSSLMNR GGGVLTGFND LSSNSQMNAQ  180
NLGSNLQFST TRMPQLLENS SNFSGFQGLD DGLANALFPN RPTLLRPLES FPSVGAQPTL  240
FQKRAALRKN LADGGGNLGV LGSQGGLVLN EGNERKREMG VENEKKRKMR GGDDVDDLSF  300
DGSGLNYDSD EFTENTKVDD GAKNGGNSSN ANSTVTAAGG GGGGGGGHKG KKKGLPAKNL  360
MAERRRRQKL NDRLYMLRSV VPKISKMDRA SILGDAIEYL KELLQRINNL HNELESIPPG  420
SALTPTGNTF HPLTPTPATL PNRIKEELCP SSLPSPNGQP ARVEVRQREG RAVNIHMFCG  480
RRPGLLLSTM RTLDNLGLDI QQAVISCFNG FAMDVFRAEQ CKEGQDVHPD QIKAVLLDLI  540
GFHGMV*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1350366KKKGLPAKNLMAERRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3589040.0KU358904.1 Pyrus ussuriensis bHLH1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009368799.10.0PREDICTED: transcription factor ICE1-like
SwissprotQ9LSE21e-134ICE1_ARATH; Transcription factor ICE1
TrEMBLB2BF970.0B2BF97_MALDO; BHLH transcriptional factor
STRINGPOPTR_0015s11650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24143482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-126bHLH family protein