PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr008509.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family HSF
Protein Properties Length: 484aa    MW: 54241.1 Da    PI: 5.6084
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr008509.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.65.4e-35161062101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++e++sws+n++sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +++k+ll++i+
   Pbr008509.1  16 FLLKTYDMVDDSATDEIVSWSSNKKSFIVWNPPEFARVLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIQDQKHLLKNIH 103
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   Pbr008509.1 104 RRK 106
                   *98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-3712105IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467858.43E-3512105IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.2E-6012105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-191639IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.4E-3016105IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-195466IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405579IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000566.9E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSSNKK SFIVWNPPEF ARVLLPTYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
SERAALDDEI EKLSHDKAAL EANISRFKQQ RSEAKLQLED LTQRVSGMEQ RQKNLVTFLD  180
RAVHNPNFVE HLTRKIESMD FLAYHKKRRL PDIDHLQPVV ENGFVDNRSS SRSEFGNIFH  240
QDFSSKLRLE LSPAVSDMNL VSRSTQSSNE DGGSSTRKIS EELKGAQMRT EGVLFAPETL  300
ELSDTGTSFA FKMDSLLLRK APTVGSPRRH SLEPGLPSNE EGDGHLSCHL NLTLASTPLQ  360
VSSSPYLATV PQVGQDINES AASELNENGK DSDLRAFTNK NIADDDKPKT SSREATHNNQ  420
APPPVPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPFD EQDDGRLDHG MSRNVKDAET  480
LTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-21310517129Heat shock factor protein 1
5d5v_B6e-21310517129Heat shock factor protein 1
5d5v_D6e-21310517129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapPbr008509.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR1321930.0KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009350929.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-163HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLA0A172C4J70.0A0A172C4J7_9ROSA; Heat shock factor 2
STRINGXP_009350928.10.0(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-166HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]